Reactor Girl (Tragedy Strikes Press- short story anthology)
- #1 (Dec 1991) - "Normal" ; "Sparkie McGee"
- #2 (Apr 1992) - "Merv & Dave in Easy Money" ; "Sparkie McGee"
- #3 (Jun 1992) - "Sparkie McGee"
- #4 (Aug 1992) - "Sparkie McGee"
- #5 (Oct 1992) - "Sparkie McGee"
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Sin (Tragedy Strikes Press)
- #1 (Jun 1992) (first Nod, Captain Rightful)
- #2 (Aug 1992)
- #3 (Oct 1992)
- #4 (Dec 1992)
- #5 (Feb 1993)
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Sputnik (Black Eye Productions - anthology)
- #1 (Nov 1993) (first Atomic City Tales)
- #2 (Summer 1994) (Atomic City Tales
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Sin Comics (Black Eye Productions)
- #1 (Dec 1993) (first Big Bang)
- #2 (Mar 1994) (first Space Ape #8)
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Savage Love (Bear Bones Press - anthology)
- (1994) - "It's Mythillogical" (written by sex columnist Dan Savage)
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Atomic City Tales (Vol. 1, Black Eye Productions)
- #1 (Summer 1994)
- #2 (Autumn 1994)
- #3 (Spring 1995)
- Special #1 (Summer 1995)
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Buzz Buzz Comics Magazine (Horse Press - anthology)
- (Feb. 1996) - "Super Gag" (Jam with Paul Pope)
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Giant THB (Horse Press - anthology)
- (1996) - "Canyon Kids" (story by Jay Stephens set in Paul Pope's THB universe)
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Tex Avery's Comics and Stories (Dark Horse Comics - anthology)
- #3 (June 1996) - "Son of King-Size Canary"
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The Land of Nod (Vol. 1, Black Eye Productions)
- #1 (Mar. 1996) (Space Ape #8)
- #2 (July 1996) (Captain Rightful)
- #3 (April 1997) (First Tutenstein)
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Atomic City Tales (Vol. 2, Kitchen Sink Press)
- #1 (May 1996)
- #2 (July 1996)
- #3 (Oct. 1996)
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The Land of Nod (Vol. 2, Dark Horse Comics)
- #1 (July 1997) (first Jetcat in comic books)
- #2 (Nov. 1997)
- #3 (Feb. 1998)
- #4 (June 1998)
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Aliens: Havoc (Dark Horse Comics - anthology)
- (1997) - (written by Mark Schulz)
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Dark Horse Presents Annual 1997 (Dark Horse Comics - anthology)
- (Feb. 1998) - "The Stiff" (written & inked by Jay Stephens; pencils by Mike Allred)
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Guff (Dark Horse Comics - anthology)
- (April 1998) - (first Icky Animal)
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ALIENS: WRAITH (Dark Horse Comics)
- (July 1998) - written by Jay Stephens; art by Eduardo Risso
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SCATTERBRAIN (Dark Horse Comics- anthology)
- #4 (Sep. 1998) - (first Oddette)
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THE SPIRIT: THE NEW ADVENTURES (Kitchen Sink- anthology)
- #7 (Oct. 1998) - "The Ghost of Tiger Traps" (written by Jay Stephens; art by Paul Pope)
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THE INVISIBLES (DC Comics)
- #8 (Aug. 1999) (written by Grant Morrison; pencils by Sean Phillips; inks by Jay Stephens)
- #7 (Oct. 1999)
- #6 (Dec. 1999)
- #5 (Jan. 2000)
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UNKNOWN QUANTITIES (Funny Valentine Press- anthology)
- (Fall 1999) - Benefit comic commemorating the 1999 March of the Americas (Jetcat story).
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DEADENDERS (DC Comics)
- #4 (June 2000) - "The Last Days" (written by Ed Brubaker; pencils by Warren Pleece; inks by Jay Stephens)
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NOCTURNALS: TROLL BRIDGE (Oni Press)
- (Oct. 2000) - 5 pages (written by Dan Brereton, drawn and colored by Jay)
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WORLD'S FUNNEST (DC Comics- anthology)
- (Nov. 2000) - ‘Superfriends’ segment (written by Evan Dorkin, drawn by Jay)
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JETCAT CLUBHOUSE (Oni Press)
- #1 (April 2001)
- #2 (June 2001)
- #3 (August 2001)
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STAR WARS TALES (Dark Horse- anthology)
- #9 (Sept 2001) - story by Jay featuring Darth Vader
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THE ATOMICS (AAA Pop)
- #15 (Nov. 2001) - reprint of 'The Stiff' from Dark Horse Presents Annual 1997, with new colour by Laura Allred and new pin-up art by Jay Stephens and Mike Allred.
- (2002) - collected in 'The Atomics King-Size Giant Spectacular: Running With The Dragon!'
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NEXUS VS. WAMPUS (SEMIC- French anthology)
- Planète Comics #14 (July 2002) - written by Jean-Marc Lofficier featuring NEXUS, created by Mike Baron & Steve Rude.
- (April 2003) - reprinted in English in STRANGERS #2 by Image Comics.
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FELIX THE CAT SILLY STORIES! (Felix Comics, Inc.- anthology)
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